I had slept with two women with protection couple of months ago and wasn’t worried about anything as the protection was use from start to finish.

Right after these two encounters I resumed having sex with another women whom we had unprotected sec for 16 month’s who told me she had high risk hpv for the past 10 years ( she’s 42 years old)

Her hpv test states she is positive for strain 56 which is a high risk.

For the past  four months we had sex probably 9 to 10 times total (3 times a night) in four separate occasions . 

After the last time we had sex, 10 days or 14 days later I saw couple lesions in my scrotum and the bottom of the penis shaft. 

I immediately went and got one of the lesions Biopsied which came back inconclusive. 

There was also a dna with genotyping done for both low and high risk with no detection

The report stated that it’s a benign verecous growth and it’s between Condyloma and seborrheic keratosis. The report states that due to limited genotyping. 

I was prescribed Aldara as the dermatologist thought that because of the location it’s more likely than not the lesions are caused by hpv. 

My question is 

Since I discovered this legions 10 to 14 days after we had sex, should we obstain from having sex until I treat all the suspected lesions or is it too late to do so as we’ve been having sex without protection the number of times I mentioned above, the last time being 10 to 14 days before discovering the lesions. 

Should I wait until she gets the vaccine, or is likely she has wherever I have. 

Should we use condoms from now on? 

Also, do you think the warts are probably caused by here hpv strain 56